Pournelle II

Novelist and social observer Jerry Pournelle had recently posted his objections and rejections to an editorial written by Richard Dawkins. The original piece by Dawkins was a protest against his mangled interview for the creationist movie “Expelled.”

Pournelle ignores or is ignorant of the context of the Dawkins piece. None the less, while Pournelle repeatedly says he does not want to argue the Intelligent Design creationism case, he reiterates it and ignores any counter arguments and even implied there were none.

On the other hand, intelligent design theorists do have scientific critiques of Natural Selection’s ability to explain what we observe. I have already alluded to one, irreducible complexity, which states that certain organism or organs are simply too complex to have arisen in stages.

The refutations of Behe’s notion of “irreducible complexity” begin with its definition.

Behe's definition of IC is”

A single system composed of several well-matched, interacting parts that contribute to the basic function of the system, wherein the removal of any one of the parts causes the system to effectively cease functioning. (Darwin's Black Box, pg. 39)

Unnoticed by Behe was a deadly flaw, the existence of something that is IC under that definition merely loses a particular function if damaged. It says nothing about how such an entity or process could have evolved by the combinations of otherwise functional entities. Behe’s favorite example is a five part mousetrap. But, every single part has independent functions, and multiple functions exist for various combinations of these individual parts. This is well known in biology as “Cooption” the common occurrence when one, or a group of genes is duplicated, and then modified resulting in new functions. One concrete example is the evolution of nylonase. Only a slightly more difficult notion is scaffolding; two or more existing processes are combined and the result is then simplified by reduction in the number of steps or parts. We see biological examples most easily in the reduction of genes in obligate parasites, and the most famous example is endosymbiosis.

So, then Behe then tried to salvage his cherry with a redifinition;

An irreducibly complex evolutionary pathway is one that contains one or more unselected steps (that is, one or more necessary-but-unselected mutations). The degree of irreducible complexity is the number of unselected steps in the pathway.

Note well that Behe has abandoned the entire core of his original argument regarding function. In its place he has substituted “necessary-but-unselected mutations.” Real science has shown that even mildly unfavorable mutations are commonly transmitted; ie the unselected steps in Beheland. We have known this for decades. These unselected, or even detrimental mutations are then material available for recombination, and the expression of new complex functional genomes.

Behe’s latest is to take a page from Bill Dembski and adopt a probability argument. In the just released “The Edge of Evolution,” he claimed that there is a limit on the number of genetic changes, mutations, that can be allowed. His example is protein to protein binding, and Behe insisted that more than two sites just cannot evolve independently. This is of course nonsense. A very well illustrated and easy to follow refutation is available from Ian Musgrave, “ Behe versus ribonuclease; the origin and evolution of protein-protein binding sites” http://pandasthumb.org/archives/2008/04/behe-versus-rib.html

Another of Behe’s arguments in “The Edge of Evolution” bites the dust with the recent publication from Richard Lenski’s research group at the Michigan State University. (Z.D. Blount, C.Z. Borland, and R.E. Lenski, "Historical Contingency and the Evolution of a Key Innovation in an Experimental Population of Escherichia coli." PNAS). Carl Zimmer’s “Microcosm: E. coli and the New Science of Life” (Pantheon, May 6, 2008), places this research in the context of broader scientific questions. An easy to understand presentation of their most recent article is available at “A New Step In Evolution.”

http://scienceblogs.com/loom/2008/06/02/a_new_step_in_evolution.php

Jerry Pournelle posted a very poor bit of work Gods, Earthlings, and Intelligent Design” on June 13, 2008. Pournelle was reacting to an opinion piece in the Los Angles Times by Richard Dawkins. I don't say that Pournelle was ‘responding’ because that implies his writing was related to what Dawkins had written - he was merely reacting.

Pournell began,

I don’t usually get into the “Intelligent Design” argument, because I don’t have a lot to add to it; but once in a while poseurs like Professor Richard Dawkins jump into the fray with such outrageous aplomb that I feel compelled to answer. See here for his latest.

All that is clear from reading Pournelle’s item is that he does not like Richard Dawkins. And judged from this article, he correctly acknowledges not having “a lot to add” to the discussion of intelligent design creationism versus science. I have yet to finish reading any Dawkins book I have started, and I find his evangelical atheism tedious. But I am an activist in the Evo/creato conflict. I have contributed to the National Center for Science Education Reports and such internet sites as the TalkOrigns Archive, and I co-founded the popular Panda’s Thumb site. I was also a contributing author to “Why Intelligent Design Fails: A scientific critique of the new creationism” (2004 Rutgers University Press). My chapter in that book, “The Explanatory Filter, Archaeology and Forensics” was featured as part of Mike Behe’s cross-examination in the famous Dover “Panda’s” trial.

There are certainly problems with Dawkins’ piece, particularly his theological argument that a “simple god” could not have created a complex universe. Scientific cosmology has proposed that “simple” rules govern the behavior of matter and energy, and that as Dawkins must agree, these simple rules control biological life and evolution as well. If simple rules can lead to humans impregnating virgins (a sadly common unplanned occurrence), why couldn’t a simple god manage?

Pournelle’s attack on Dawkins ends up reading as an argument for ID creationism, and not a very good one. Take his use of a quote from the LA Times, “Intelligent design ‘theorists’ (a misnomer, for they have no theory) often use the alien scenario to distance themselves from old-style creationists: “For all we know, the designer might be an alien from outer space.” This attempt to fend off accusations of unconstitutionally importing religion into science classes is lame and disingenuous. All the leading intelligent design spokesmen are devout, and, when talking to the faithful, they drop the science-fiction fig leaf and expose themselves as the fundamentalist creationists they truly are.”

Pournelle claims this is typical of Dawkins and “also egregiously wrong.” What?? It is exactly correct.

1) There is no ID theory, 2) ID proponents do use the “aliens or time travelers could be the designer/creator” claim as a way to obscure their intimate connection to “scientific creationism,” and fundamentalism, 3) when speaking to religious fundamentalists the ID proponents are very clear in repudiating the “outer space” claim and acknowledge their religious motivation – supernatural creationism by the Judeo-Christian god.

Let's look at some statements by some principle ID proponents.

First, Philip Johnson:

“Our strategy has been to change the subject a bit so that we can get the issue of intelligent design, which really means the reality of God, before the academic world and into the schools.” Date: January 10, 2003. Source: American Family Radio

Michael Behe:

“Our intelligence depends critically on physical structures in the brain which are irreducibly complex. Extrapolating from this sample of one, it may be that all possible natural designers require irreducibly complex structures which themselves were designed. If so, then at some point a supernatural designer must get into the picture. I myself find this line of reasoning persuasive. In my estimation, although possible in a broadly permissive sense, it is not plausible that the original intelligent agent is a natural entity. … Thus, in my judgment it is implausible that the designer is a natural entity." (Reply to My Critics)

And three from William Dembski:

"Indeed, intelligent design is just the Logos theology of John’s Gospel restated in the idiom of information theory." 1999 “Signs of Intelligence,” Touchstone Magazine.

"My thesis is that all disciplines find their completion in Christ and cannot be properly understood apart from Christ." William Dembski, 'Intelligent Design', p 206

“…but let’s admit that our aim, as proponents of intelligent design, is to beat naturalistic evolution, and the scientific materialism that undergirds it, back to the Stone Age. “DEALING WITH THE BACKLASH AGAINST INTELLIGENT DESIGN version 1.1, April 14, 2004”

But, it turns out that Pournelle has not read what Dawkins wrote. Pournelle reads “Begin with the last sentence: that only fundamentalist creationists assert the possibility of evolution influenced by aliens from outer space.” In the LA Times item, Dawkins clearly discussed this “outer space” notion as presented by Francis Crick and Leslie Orgel and makes no inference regarding any religious motivation. Dawkins is referring to ID creationists as fundamentalists. Dawkins observes that ID creationists do not seriously argue the space alien idea.

This is such a gross misreading of what Dawkins wrote that I wonder what is his problem. Is it that Pournelle dislikes Dawkins to the extent that he cannot even look for a legitimate failing, but grasps at the first thing he can distort? Or does he actually support ID creationism and throws up a strawman argument to burn? Or, has he never bothered to learn what ID creationism is about and lack any basis of opinion?

If the later, I recommend some reading;

Pro ID creationism

Behe, Michael
2007 The Edge of Evolution. New York: Free Press

Dembski, William
1999 Intelligent Design: The Bridge Between Science and Religion. Downers Grove, IL: InterVarsity

_______
2002. No Free Lunch. Why Specified Complexity Cannot Be Purchased Without Intelligence. Lanham, Maryland: Rowman & Littlefield Publishers.

Johnson, Phillip E.
1993 Darwin on Trial, 2nd Edition. Downers Grove, IL: InterVarsity Press

Moreland, J. P. (ed.)
1994 The Creation Hypothesis: Scientific Evidence for the Intelligent Designer. Downers Grove, IL: InterVarsity Press

Pro science

Barbara Carroll Forrest, Paul R. Gross
2004 Creationism's Trojan Horse: The Wedge of Intelligent Design. Oxford University Press

Mark Perakh
2003 Unintelligent Design. New York: Prometheus Press

Matt Young, Taner Edis (Editors),
2004 Why Intelligent Design Fails: A Scientific Critique of the New Creationism. Rutgers University Press

And of course the decision in the Kitzmiller v. Dover trial.

Instant Classic

Here is a classic creationist’s comment regarding the Texas Science Standards posted by “wenchwoman” to the Huston Chronicle 6/15/2008 11:48 AM CDT;

Creationists are not the only ones who question evolution. Evolution has not been tested nor proven. The fossil evidence does not support transitional evolution, which is the reason that you have arguments among the evolutionists which include theories like punctuated equilibrium. According to the laws of physics, for things to randomly become more complex does not make sense.

Why be afraid to teach the facts? Evolution has a lot of holes and flaws. Why use old, fake pictures like the moths in England (which have long been proven to have been faked) in modern textbooks? Give some texts that present the full evidence and keep up w/the data. That's all anyone wants.

I saw seven errors at first glance.

The first sentence suggests that scientists, like creationists, “question evolution.” Of course, creationists do not question evolution, they reject it out of hand. The overwhelming majority of biologists and others with professional qualifications related to evolutionary biology accept the basic theory of evolution without reservation. There are creationist biologists employed by religious institutions, and even government laboratories. In every case I have examined, their religious commitments preceded and dominated their scientific training. Scientists do widely and vigorously examine and reexamine the details of evolutionary theory. Examples would be the relative significance of transgenetic exchange versus mutation in the development of genomic complexity, or instances of allopatric versus sympatric speciation.

Next, it is perhaps too technical to point out that scientific theories are not subject to “proof” in the meaning of ultimate truth. We must always be open in principle that some better theory might be proposed. For example, we are still hoping for a fully successful theory of gravity. In this regard the Theory of Evolution is far better tested than theories of gravity. You can demonstrate this for yourself using a search engine for scientific literature, say Medline, or Google Scholar.

There are ample numbers of transitional fossils which expose the contrary claim as a simple falsehood. The higher in the taxonomic category you look the easier it is to find transitions. What is difficult is to absolutely establish direct species-to-species transitions from fossils. This, and now well known variations in the rate of species changing made the argument for punctuated equilibria so interesting. Darwin in his “The Origin of Species” pointed out that species extinction was a key event widening the separation between related species. Punctuated equilibrium arguments are extinctions on a large scale.

“The laws of physics” most certainly do not counter evolution. This is the hoary Second Law of Thermodynamics (SLoT) argument. There are many ways to refute this, but my favorite is to point out that we all begin as a single celled egg- quite simple compared to a billion celled adult. The SLoT no more prevents this than it does evolution. For a more through discussion, I recommend the following website;

http://www.2ndlaw.com/evolution.html

Personal and professional harassment is a very common reason American teachers are afraid to teach about evolution today. And a recent study found that about 16% of high school science teachers are actually creationists who either skip evolution or (nearly 14%) actually teach creationism. (Citation: Berkman MB, Pacheco JS, Plutzer E (2008) “Evolution and Creationism in America's Classrooms: A National Portrait.” Public Library of Science, Biology 6(5): e124 doi:10.1371/journal.pbio.0060124

The final significant error was about the Peppered Moth (Biston betularia) research by Bernard Ketterwell. These moths underwent a considerable change over the last two centuries from a light color with black specks, to a nearly all black form, and then back to a lighter form. This change was in parallel with the decline of light colored background in the trees the moths rest on caused by industrial soot, and the recovery following environmental laws after the Second World War. Ketterwell photographed two moths which he mounted to a tree for an illustration of the strong contrast between the two forms of moth. These photos were widely used in textbooks, because of how obvious and easy to understand this example of evolutionary change really is. The major falsehood told by creationists about this research was that Ketterwell’s data were faked by using dead moths glued to a tree. This has been strongly promoted by creationist Jonathan Wells of the Discovery Institute, in his book “Icons of Evolution.” The facts are quite different.

Well, any experiment can be improved on, and entomologist Michael Majerus was critical of Ketterwell’s earlier work. After many years, he was forced to conclude that Ketterwell had been correct all along. You can read more about this at;

http://pandasthumb.org/archives/2007/08/peppered-moths.html

Louisiana Shows the Way!

The lower house of the Louisiana legislature has overwhelmingly passed SB 733 by a vote of 94 to 3. The act claims to support “academic freedom.” Specifically, the Louisiana Science Education Act states;


13 B.(1) The State Board of Elementary and Secondary Education, upon
14 request of a city, parish, or other local public school board, shall allow and
15 assist teachers, principals, and other school administrators to create and foster
16 an environment within public elementary and secondary schools that promotes
17 critical thinking skills, logical analysis, and open and objective discussion of
1 scientific theories being studied including, but not limited to, evolution, the
2 origins of life, global warming, and human cloning.

3 (2) Such assistance shall include support and guidance for teachers
4 regarding effective ways to help students understand, analyze, critique, and
5 objectively review scientific theories being studied, including those enumerated
6 in Paragraph (1) of this Subsection.

7 C. A teacher shall teach the material presented in the standard textbook
8 supplied by the school system and thereafter may use supplemental textbooks
9 and other instructional materials to help students understand, analyze, critique,
10 and review scientific theories in an objective manner, as permitted by the city,
11 parish, or other local public school board.

12 D. This Section shall not be construed to promote any religious doctrine,
13 promote discrimination for or against a particular set of religious beliefs, or
14 promote discrimination for or against religion or nonreligion.

We all know that this is a bill to be used to inject creationism into science curriculum and to return religious fundamentalism to top place in Louisiana schools. We know this because the act itself denies this in section D. It is also obvious because the fundamentalists and creationists who all love the bill are in a loud chorus denying that they are drooling over this religious victory.

There has been an equal outpouring of angst and outrage from secularists, most notably The Louisiana Coalition for Science, and the National Center for Science Education. But, I think they have missed a critical issue- this return of fundamentalism and ignorance is a much needed economic stimulus for a chronically underemployed region.

This Act when implemented will allow Louisiana teachers to finally stop teaching- even halfheartedly- that humans truly and scientifically are all one family- that's commieism. The economic gains from racism are astounding! This alone would kill any sort of unionism. Why that was the whole point of the War Between the States. With a scientifically illiterate public there would be no support for such nonsense as environmental laws. Without a labor movement, and those pesky treehuggers out of the way, the business opportunities for Louisiana are wide open!

Let’s face it, there are some dirty, deadly jobs that need doing. Sure, there are safe alternatives, and remediation measures. But they cost money, and that cuts profits. Only Satan cuts profits! These much needed dirty jobs will make the rich richer, and the poor dead. Its not like the bankers will actually have to live there.

"Origins of Life: Biblical and Evolution Models Face Off"

My review of Rana&Ross "Origins of Life: Biblical and Evolution Models Face Off" has been posted on the National Center for Science Education's website;


I have a cold, so I don't feel like a whole lot of discussion today- hopefully tomorrow I'll feel better.

Another Book Review Blocked by Amazon.com

Amazon.com has readers to "moderate" the reviews submitted by the public. I have had reviews critical of creationist twaddle blocked. Here is an example below. I plan to edit it a bit and resubmit.

I was urged to read Carle R. Froede's “Geology by Design” by a young earth creationist who assured me that all my doubts about a young earth would be removed, and that all the physical evidence of an ancient earth would be refuted. Well, that did not happen. Instead I found another book that misrepresented geology, failed to account for the known data, and casually invoked miracles to patch-over internal failings of his proposed creationist scenarios.

The first, and most critical mistake made by Froede was that the science of geology was initiated as an effort to discredit biblical literalism. The founders of geology were certain that the rocks and surface features of our planet were largely the result of the Noachian Flood. Only after decades of accumulated evidence that could not be resolved into a flood event, did the prevailing scientific conclusion that there could never have been a global flood prevail. It is not at all as Froede declared that, “uniformitarianism was established precisely to rid history of the Genesis flood (pg. 12).” The actual history of flood geology is presented honestly and in great detail by Davis A. Young, an evangelical Christian and Professor of Geology at Calvin College, in his 1995 book “The Biblical Flood: A case study of the Church’s Response to extrabiblical evidence” (Grand Rapids: Eerdmans, Paternoster Press). Wrapped in Froede’s error is the further false notion that his biblical interpretation is the “Truth,” and that if his understanding of Genesis 6:9-8 is not supported by science, then science is wrong. For a superior point of view, read David Snoke’s 2006 book, “A Biblical Case for an Old Earth” (Grand Rapids: Baker Press), which if nothing else will dispel the notion that only a young earth, and global flood can be reconciled with the Bible.

But what of the “science” to be found in Froede’s geology? It is as weak as his history and theology. Just one example will be sufficient. The first chapter of Froede’s book presents the organization of the scientific geological column which he contrasts with his proposed “biblical geological time scale.” Froede falsely claims that the scientific geological column is “more gaps than record.” My colleague Glenn Morton, a former young earth author who turned away YEC because he saw the field evidence with his own eyes, has compiled a list of locations around the world where the entire geological column, in its proper order is substantiated. Here is his list;

The Ghadames Basin in Libya
The Beni Mellal Basin in Morocco
The Essaouira Basin in Morocco(Broughton and Trepanier, 1993)
The Tunisian Basin in Tunisia
The Oman Interior Basin in Oman
The Western Desert Basin in Egypt
The Adana Basin in Turkey
The Iskenderun Basin in Turkey
The Moesian Platform in Bulgaria
The Carpathian Basin in Poland
The Baltic Basin in the USSR
The Yeniseiy-Khatanga Basin in the USSR
The Farah Basin in Afghanistan
The Helmand Basin in Afghanistan
The Yazd-Kerman-Tabas Basin in Iran
The Manhai-Subei Basin in China
The Jiuxi Basin China
The Tung t'in - Yuan Shui Basin China
The Tarim Basin China
The Szechwan Basin China
The Yukon-Porcupine Province Alaska
The Williston Basin in North Dakota (Haimla et al, 1990, p. 517)
The Tampico Embayment Mexico
The Bogata Basin Colombia
The Bonaparte Basin, Australia (above this basin sources are Roberston Group, 1989)
The Beaufort Sea Basin/McKenzie River Delta(Trendall 1990)
The Parana Basin North, Paraguay and Brazil( (Wiens, 1995, p. 192)
The Cape Karroo Basin (Tankard, 1995, p. 21)
The Argentina Precordillera Basin (Franca et al, 1995, p. 136)
The Chilean Antofagosta Basin (Franca et al, 1995, p. 134)
The Pricaspian Basin (Volozh et al, 2003)

See “The Geologic Column and Its Implications to the Flood” http://home.entouch.net/dmd/geo.htm for more information.

So Far Today.

I have a cold, and so I skipped fishing today (Friday night was great- I caught the jackpot fish, a 6 lb baracuda).

The Texas Board of Education is loaded with creationsits, and is coming up on their renewal of the science standards. I have been watching, and commenting on the Houston Chronicle website.

“David Bradley, R-Beaumont, told the Chronicle, "Evolution is not a fact. Evolution is a theory and, as such, cannot be proved."

The common confusion regarding fact, hypothesis, and theory may seem to be a distraction. But let me try to clarify this so that we can at least agree to terms. First, a hypothesis is a statement that makes a specific observable prediction that is the test of the hypothesis. “Atoms are made of neutrons and protons and electrons, therefore an atom can be separated into these objects.” The observations made constitute the “facts” used to test a hypothesis. A theory is a general statement that provides a explanation for a number of confirmed hypotheses, and suggests new hypotheses that can be tested. Another popular error is that a “Law” is more powerful than a theory. In fact an empirical law, let’s say Ohms Law, is a mathematical statement of relationships between observations. This is far weaker than electromagnetic theory because the theory can be used to derive the “law” but the law does not derive the theory. Philosophers of science like to point out that a theory can only be falsified, and never proven. This is probably what confused Mr. Bradley. The atomic theory can not be “proven,” nor the germ theory of disease.

Evolution is a fact because we can observe variation within populations, and the reproductive isolation of populations (species), and the change in populations (species) over generations. We have observed the change in populations over time produce newly reproductively isolated populations (new species). These are facts. These facts are confirmation of hypotheses generated from the Theory of evolution.

The classic statement of evolutionary theory by Charles Darwin had two main parts, that the obvious physical variation between individual plants and animals would have consequences for their ability to thrive and reproduce, and that because of this species would over generations separate into two or more new species. This is “selection and common descent.” The mechanism that produced the obvious variation within populations was unknown to Darwin, but he saw several sorts of selection in action; environmental (Darwin’s “natural selection”), behavioral (Darwin’s “sexual selection”), and the already well known artificial selection by breeders known even in ancient times.

The independent discovery of genetics as the means by which physical change was introduced into populations was at first seen as a direct challenge to Darwin’s theory, and for thirty years biologists were in separate camps. British scientists and mathematicians resolve the problem in the 1930s, formulating the “new synthesis” of genetics and evolution. This added the independently confirmed theory of genetics (the “random mutation” part) to the equally confirmed theory of evolution (the selection and common ancestor part).

Mr. Bowman, and probably many of the Texas SboE, thinks this is all somehow in doubt.

It is not.

The current effort in evolutionary biology is to produce a new “new synthesis” of developmental biology (embryology) and evolutionary theory. So while the TSBoE is fighting for creationism, they are denying what was resolved over seventy years ago, and totally missing what is right in front of their faces.

“Washbasin” wrote, “One would have to wonder where you would include the factual findings of science that suggests Divine Creationism. Every one is ready to pick up the theory of evolution without enough facts available to make a final conclusion. In fact, some who have fine credentials, fail to have common sense. If a leader or educator; why would I allow him to push his conclusions on to me. He is not a survivalist, he is weak, he spouts science but does not use final scienctific documentation to complete the theory propect to a final scienctific conclusion without taking the same liberties that a Creationist view point has to use.
In fact, a Creationist viewpoint will do better in and among Nature. Nature can be cruel. But it is what we have here on this Planet, we call Earth. Nature will render all things to you. Even lessons that point to intelligent design or what some have tired to dirty a line of science which can be called, Creationism.”

Mr. Washbasin, your notion that scientists “can not learn enough to survive on his own in Nature.” is not relevant to the discussion. It is moreover incorrect. All the biologists, archaeologists, geologists, and paleontologists I know are very competent in the field. We all need the skills necessary to not only survive (well) but at the same time conduct our research. Since we need to be able to work where ever there is data to be had, from the bottoms of seas to the tops of mountains, we have (or rapidly gain) the skill set required. In the last decade I have worked with students in tropical jungles, deserts, mountains, caves, on the ocean, in tiny villages and urban slums. We all got our jobs done without any serious casualties while dealing peacefully with rattlesnakes, mountain lions and drunks. (Dang those mosquitoes though).

Personally, I have collected data that helped confirm evolutionary theory for over 35 years now. I have used guns, hunting dogs, fishing rods, backhoes, front loaders, trucks, microscopes, computers, shovels, picks- both pickaxes and dental, nuclear reactors, chemistry labs, and even the kitchen sink. This is not unusual for a field scientist.

Finally, you are mistaken that there is any data supporting creationism.

Carpenter wrote, “The fossil record does not show macroevolution but a series of extinctions followed shortly (in evolutionist terms) by new life bearing no resemblence to the former. This is not religion but observation of the scientific data. Darwin who observed microevolution (intraspecie change) made the massive leap of faith (YES FAITH) to macroevolution (interspecie change). He predicted innumerable transitional life forms would be discovered but ifr any have been the record is paltry at best. By Darwin's own admission, this would disprove macroevolution.

The problem with teaching creationism is that this is meant young earth/universe creationism, which is biblically unnecessary and scientifically absurd. The Hebrew "yom" can mean anything from a 24hour day to an eon. If yom is translated "period" instead of "day" there is no conflict with a 4+ billion year old earth and a much older universe.

It is this form of creationism which should be taught as an reasonable alternative. The scientific consensus is that the universe began with a hot big bang and has continued to expand. If it had a beginning it had to have a "beginner" or you are left with the proposition that nothing plus nobody equals everything.”

Mr. Carpenter, I am going to make a big guess that you have never personally studied the fossil record of any taxonomic group in any detail. I will guess that you have never worked in field recovery of fossils, or in laboratory preparation of fossils, or in the systematic analysis of fossils. I will bet that you have never published or taught college level courses about fossils.

How am I doing?

I have done each of those things, and I am not that unusual. There is more than ample evidence for smooth change (Darwin’s gradualism) in the fossil record. Large land animals are more difficult to fossilze, find and prepare, and so those data will never match that available for tiny marine critters like foramifera or even mollusks. It doesn’t matter because the general principles are identical.

Here is the big difference between the manure that, “Students need to be able to jump to their own conclusions." (David Bradley, R-Beaumont) and giving them the skills they need to know how evolutionary theory has successfully met all challenges for 150 years. In the sciences, you can simply say, “Go out into the field, or into the laboratory and show me the evidence.” “Teach the controversy,” and the equally dishonest slogan “teach the strength and weaknesses” won’t educate.

Ha ha Harum.

Turkish writer Adnan Oktar (pseudonym Harun Yahya) is a fundamentalist creationist. Unlike the garden variety American or Australian Christian creationist, Oktar is a fundamentalist Muslim. His many antiscience publications are echoes of Western creationists however, and closely follow the trail of young earth creationist (YEC) operations such as the Answers in Genesis Ministries, and Institute for Creation Research.

Oktar is a rabid anti-Semite, and Holocaust denier as well as creationist. For years he was little known outside of Turkey, or those few scientists and educators directly engaged against the creationist assault on science and reason. That changed with the publication of his Atlas of Creation. The Atlas is a massive book, weighing over 10 pounds, with one message; evolution is evilution. Why this changed Oktar’s profile is that he found funding to send hundreds of copies to US college and university faculty, and scientists around the world through his, "Foundation for Scientific Research" (BAV).

Oktar’s light shined bright enough that in August 2007 he convinced a Turkish court to block access in Turkey to WordPress.com, a website that hosts more than a million blogs, many of which are science related. Oktar objected because his opponent, Edip Yuksel, appeared on the site.

His light has dimmed however, and he has recently been found guilty of starting a criminal organization and profiting from it. He was sentenced 3 years in prison, but is free pending appeal.

He has attributed his court defeat to Freemasons and their opposition to the Atlas of Creation.

“They say it [the access to Atlas of Creation] has had a huge impact, like an atom bomb.”

“I can understand why the end of Darwinism has upset them so much, because this has really demolished their entire system. Their philosophies, world views and ideologies have been shattered.”

My sense of this is that we need not try to suppress Oktar’s over-weight book. We ought to celebrate another piece of creationist stupidity. The Atlas is riddled with gross, and humorous errors. Here are just two examples; Oktar wants people to think that the current forms of life have always existed, and that they are all found as fossils. He juxtaposed photos of what he claims are fossils and what he thinks are the modern exemplar. For at least two insects, he has used fishing lures as the modern example.

Really- this is creationist zoology at its best:

No need to supress HarHar Yahha, unless to preserve the scientific reputation of Turkey.

How I spent Tuesday

I have taught Science classes for a while and have studied evolutionary theory (which, by the way is defined as something that can be tested, and is really only a hypothesis). When I teach evolutionary theory, I also include all the problems evolutionary bioligists have with their theory, like "Dating methods using use circular dates, archaeopteryx, transitional forms, Java, Piltdown, and Neanderthal man, life to non-life impossibilities, mutations, astronomical mathematical probabilities, defiance of scientific laws (entropy. Etc.), and several more. I have a real problem with teaching evolution as fact when only 6% of the US population believes Evolution alone should be taught in schools. I would suggest that neither evolution or creation of any kind be taught in science classrooms, since they both fail the scientific method test (cannot be scientifically repeated). Any teaching about origins should be in a phylosophy or religion class, since neither are really science. Tom Kabel.

I find it hard to believe that Tom Kabel is a science teacher in a public school. It is possible- too possible- but hard to believe. I would hope that teachers could spell, and present a reasoned, logical argument. Evolutionary biologists don’t have any problem with the age of the earth. Evolution happened, and however much time is available is the amount of time it took. The pace and tempo of evolutionary change is actually an active area of study, and very practical given the current high rate of species extinctions. However, Tom wants to have dating explained. The fact is that sedimentary sequences were worked out in the late 1700s and early 1800s. The core material data for all sedimentary studies is a location were there are multiple deposited strata resting on top of one another in what are called "clean" or "conforming" contacts. It was realized over 200 years ago that the fossils contained within the various strata were a useful characteristic that could be used to correlate strata from distant locations. This didn't assign any "age" to the rock, but placed it within a confirmed sequence. This was quite useful and was used commercially to discover new coal fields as early as the 1820s. Nobody new how old these rocks might be until the middle 20th century. The discovery of radioactivity in the late 1800s and the confirmation of the atomic structure of elements in the 1920s allowed for the application of radioactive decay to the question of how old are rocks (and the earth). Since the 1960s the excellent match between stratigraphic sequence and radiometric dates has enabled some shortcuts to be used when 1) the exact age of a strata is not particularly important, or 2) where there is an absence of directly datable rock, and I might also add 3) where there is just not enough money for lab work. But, "biostratigraphic" dates are not considered as reliable as absolute dates.

Neil77 wrote:

houston_res wrote:
"I don't know what weaknesses in the theory of evolution they plan to discuss."

Well, since you asked, here are just a few:
1) The Cambrian explosion
2) The Miller-Urey experiment requires an atmosphere that can not exist naturally
3) Heckel's drawings are known fakes
4) The peppered moth experiment was altered (they don't naturally rest on tree trunks, the experimenter physically placed them there, etc.)
5) The fossil record shows certain species to be older than their predecessors.
6) Macroevolution can not account for the existence of the cell

Now, none of these (excepting the Cambrian explosion) are actually evidence AGAINST evolution. They simply show that much of the evidence FOR it is nonexistent. The truly irritating argument to someone who knows anything about science is the gravity argument. Yes, they are both theories, but gravity is what is known as a FALSIFIABLE theory. This means that if it were false, there would be an experiment capable of proving it so. Evolution is not falsifiable. Another major irritation is the ignorance of the difference between micro- and macro-evolution. Microevolution is observable and, as much as anything is, provable. Macroevolution is not only unprovable, but has no evidence to support it that is also capable of supporting several other possibilities.
6/3/2008 11:51 AM CDT

It is hard to choose between Neil77's PRATT list (Points Refuted Thousands of Times), or dbldwn88. The pace at which these comments are flowing is remarkable.

Here is an easy one, "2) The Miller-Urey experiment requires an atmosphere that can not exist naturally"

The Miller-Urey experiment published in 1953 demonstrated that essential amino acids formed when a gas mixture of water vapor (H2O), carbon monoxide (CO), hydrogen (H2), ammonia (NH3) and methane (CH4) were sparked by electricity. The particular mixture of gasses was selected because it reflected the gas abundance seen in the outer solar system which are the least altered because of their distance from the sun. At the time, geochemists were divided on the question of what the earliest earth atmosphere was like, and from the 1970s to the middle 1990s the majority opinion was that there was likely a mixture of carbon dioxide (CO2) instead of CO, nitrogen (N2), and much less of the other gasses used by Miller. This has been misrepresented by creationists as "proof" that evolution (incorrectly linked to the origin of life) is refuted.

In fact, recent studies have conclusively demonstrated that the gasses on the earliest earth were closer to the Miller-Urey experiment than the more oxidized mix suggested during the 1980s. However, in a truly fitting irony, the last paper ever written by Stanley Miller (published this year posthumously) has demonstrated that even an atmosphere with traces of free oxygen can yield excellent amounts of amino acids;

Miller, Stanley L.,
1953 “A Production of Amino Acids Under Possible Primitive Earth Conditions” Science vol. 117:528-529

Cleaves, H. James, John H. Chalmers, Antonio Lazcano, Stanley L. Miller, Jeffrey L. Bada
2008 “A Reassessment of Prebiotic Organic Synthesis in Neutral Planetary Atmospheres” Orig Life Evol Biosph (2008) 38:105–115

So, the creationists are once again without an argument.
6/3/2008 12:53 PM CDT

These are like potato chips. “4) The peppered moth experiment was altered (they don't naturally rest on tree trunks, the experimenter physically placed them there, etc.)”

The peppered moths (Biston betularia) were a largely light colored moth with dark specks on its wings. During the industrialization of England, coal burning factories produced large amounts of soot that darkened the trees the moths rested in during the daytime. Over the course of the 1800s, the light pattern moth nearly disappeared and was replaced by an almost black form. It was proposed that this was an example of adaptive change supporting Darwinian natural selection. When environmental laws were passed in the 1940s in England, the trees began to shed their coating of soot, and the light colored moths made a reappearance. In the 1950s Bernard Kettlewell studied this recovery of the light colored moth and concluded that birds had found the moths more easily when they were of contrasting color with the trees where they rested.

There were two biologists, Bruce Grant and Michael Majerus who published criticisms of Ketterwell’s experiments. Grant, who had a personal grudge against Kettlewell, insisted that the moth’s ability to choose a resting place would have compensated for the soot covered trees, and that some other evolutionary force was responsible for the observed changes. Majerus thought that Kettlewell’s experiment could be greatly improved on technically, and that until someone (like himself) was well funded for many years, the Kettlewell result should be doubted. Biologist, critic and grumpy-old-man Jerry Coyne wrote an overblown review of Majerus’s complaints that was published in the journal “Nature,” and the creationists were all over the story like flies. New-Age science journalist Judith Hooper wrote a whole book about Bruce Grant’s hurt feelings and even hinted that Kettlewell had faked his data. Then Jonathan Wells, Intelligent Design Creationists, Discovery Institute Senior Fellow and ordained Rev. Sun Moon worshiper, wrote his “Icons of Evolution” that claimed the peppered moths were faked, and that peppered moths never rested on tree trunks.

These were all lies, of course.

The famous photo was not the basis of Kettlewell’s results- he merely used a photo of light and dark patterned moths next to each other to illustrate how easy it is to see the difference. Majerus has finished his improved experiments and discovered that Kettlewell had been correct all the time. For more information use the links below.

August 28, 2007
http://pandasthumb.org/archives/2007/08/peppered-moths.html

November 27, 2007
http://pandasthumb.org/archives/2007/11/peppered-moths-1.html

Here is one for dbldwn88, who wrote, “… life is not propagated by amino acids, but nucleic acids. Completely different molecules. And the nucleic acids that code for amino acids ONLY code for L-isomeric amino acid proteins. The probability of life arising spontaneously from nucleic acids that only code for L isomers is astronomical.”

I have written a bibliographic outline for the origin of life, but it far too long to use on this venue. Just some highlights regarding the abiotic origin of nucleic acids, and chirality;

Nucleosides;

Fuller, W. D., Sanchez, R. A. & Orgel, L. E. Studies in prebiotic synthesis. VI. Synthesis of purine nucleosides. J. Mol. Biol. 67, 25-33 (1972).

Robertson, MP, Miller SL.
1995 An efficient prebiotic synthesis of cytosine and uracil. Nature 375, 772 - 774 ()

Nelson K.E., Robertson M.P., Levy M, Miller S.L.
2001 Concentration by evaporation and the prebiotic synthesis of cytosine. Orig Life Evol Biosph Jun;31(3):221-229

Chirality;

Antonio Chrysostomou, T. M. Gledhill,1 François Ménard, J. H. Hough, Motohide
Tamura and Jeremy Bailey
2000 "Polarimetry of young stellar objects -III. Circular polarimetry of OMC-1" Monthly Notices of the Royal Astronomical Society Volume 312 Issue 1 Page 103 - February

Michael H. Engel and Bartholomew Nagy,
1982 "Distribution and Enantiomeric Composition of Amino Acids in the Murchison Meteorite", Nature , 296, April 29, , p. 838.

Jeremy Bailey, Antonio Chrysostomou, J. H. Hough, T. M. Gledhill, Alan McCall, Stuart Clark, François Ménard, and Motohide Tamura
1998 Circular Polarization in Star- Formation Regions: Implications for Biomolecular Homochirality Science 1998 July 31; 281: 672-674. (in Reports)

Chyba, Christopher F.
1997 Origins of life: A left-handed Solar System? Nature 389, 234- 235 (18 Sep 1997)

Engel, M. H., S. A. Macko
1997 Isotopic evidence for extraterrestrial non- racemic amino acids in the Murchison meteorite. Nature 389, 265 - 268 (18 Sep)

Creationists like to present this as a profound mystery that is supposed to "prove" that they are correct. I want to mention a neat instance where both left and right amino acids are used in a living thing. It is very rare, but it does happen. Next time a creationist claims to be an "expert" and that amino acid chirality "proves" something supernatural, you can gob-smack-em. The protein is called Gramicidin A and it has 8 L-amino acids, 6 D-amino acids, and one glycine which is an amino acid that is neither L- or D- in its structure. I have found that even many biologists will bet an "adult beverage" that all proteins are exclusive L- amino acids.

44,000 generations of test tube evolution.

In other news, Carl Zimmer has posted some great evolution news.

One of the most important experiments in evolution is going on right now in a laboratory in Michigan State University. A dozen flasks full of E. coli are sloshing around on a gently rocking table. The bacteria in those flasks has been evolving since 1988--for over 44,000 generations. And because they've been so carefully observed all that time, they've revealed some important lessons about how evolution works.

Richard Lenski started with a single bacteria and has raised from it the billions of cells he currently monitors.

He kept each of these 12 lines in its own flask. Each day he and his colleagues provided the bacteria with a little glucose, which was gobbled up by the afternoon. The next morning, the scientists took a small sample from each flask and put it in a new one with fresh glucose. And on and on and on, for 20 years and running.

They were able to capture the step-by-step evolution of the ability to metabolize citrate in one strain.

To gauge the flukiness of the citrate-eaters, Blount and Lenski replayed evolution. They grew new populations from 12 time points in the 33,000-generations of pre-citrate-eating bacteria. They let the bacteria evolve for thousands of generations, monitoring them for any signs of citrate-eating. They then transferred the bacteria to Petri dishes with nothing but citrate to eat. All told, they tested 40 trillion cells.

That sound you just heard was Mike Behe's head exploding.

(HT to twiggy at Tweb)

The Evolution of Faith

James Dow, a professor of evolutionary anthropology at Oakland University in Rochester, Michigan, has published a result from his program, called Evogod, that proports to study the evolution of religious feeling. His model of how religious ideas can spread as reported in NewScientist, is a rather unsophisticated application of game theory. (The source code is available from the link).

The "utility" of expressing a religious/supernatural belief was merely assumed. Any discrete value can be entered, and the higher the utility factor the sooner the trait spreads. What is absent is far more important than what was present.

The first question that was sidestepped is "Why would a group of non-believers attend to fantastic stories?" The answer is approximated from game theory as an attempt to minimize risk by minimized uncertainty. The second would be "What advantage would there be to the person promoting their "visions." This is also in the utility factor assumed by James Dow. From ethnographic and historical sources, we are aware that the role of shaman is very dangerous- witchcraft accusations are frequently lethal. So, this must be offset by an increased reproductive advantage. Dow has seemingly lumped these together as "attractiveness."

There is actual biological evidence for the evolution of religious experience, the responce that humans have to dissociative drugs is different from any other mammal. Most mammals when challenged by a dissociative, for example phencyclidine (PCP), will lose consciousness. Humans instead report euphoria, and hallucination as well as a dissociative state. These are hallmarks of mystic/religious experience.

What could the evolutionary advantage be to dissociation- the feeling of not being in one's body? This needs to be looked at as either a direct advantage, or as a disadvantage offset by some other advantage. Considering this as a direct advantage we recall that PCP was developed as a surgical anesthetic. It had the advantage of not being a strong CNS suppressant, and so respiration and cardiac function were not as depressed as with opiate anesthetics, or ether. Anesthesia was so effective that patients didn't even need to be unconscious during surgery. Dissociative states can be entered in ways other than drugs, and members of a group protected by warriors (temporarily) unaffected by pain would have a great advantage in intergroup conflicts. I think this direct advantage alone would be adequate to promote a dissociative trait.

The secondary benefits of "mystic" dissociation would be related to improved group cohesion, etc. which have long been considered in the spread of religious practices.

Dinesh D'Souza: Ignorant or a liar?

Dinesh D'Souza writes an article for AOL. On May 4th 2008 he posted an item entitled "How Darwin Lost His Faith".

He wrote,

It's widely believed that Charles Darwin lost his faith when he discovered evolution. And many contemporary atheists proclaim themselves followers of Darwin in this sense. Michael Shermer, for instance, writes that he abandoned Christianity when he learned about evolution; finally he could see how there could be design--or the appearance of design--without a designer. Richard Dawkins writes that it was Darwin who finally made it possible to be an "intellectually fulfilled atheist."

This is OK, but has nothing to do with Darwin. The fact that the truth of evolution had altered the preception of scriptural "truth" on the part of Schermer or Dawkins has nothing to do with Darwin- who was long dead- nor of the fact of evolution. I have long maintained that the only sure path to atheism is to study theology.

But, D'Souza went on to claim, "Darwin was never a very devout Christian," and in complete ignorance and contradiction of the facts, D'Souza continued that Darwin was "a lukewarm Christian."

Charles Darwin actually wrote in his "Autobiography" (published 1904) a description of how over years his faith changed from a devout orthodox young theology student, to theist and eventually agnostic. His first realization was that the geological features of the earth did not correspond to those described in the Old Testament. There were no geological evidences for a global flood, no anthropological evidences for a Tower of Babel, and he came to reject the Old Testament theology of a violent "jealous God."

Much later in his life (particularly following the early death of his daughter Anna at age 10), Darwin came to reject the doctrine of damnation and eternal torture for all unbelievers- a doctrine he called itself "damnable." At no time in his life did he express contempt for Christianity. Indeed, you will see below that he generally admired the New Testament moral code, in spite of his growing doubts about religion.

The following quotes are from "Darwin Online."

"DURING THESE two years (October 1836 to January 1839 GH) I was led to think much about religion. Whilst on board the Beagle I was quite orthodox, and I remember being heartily laughed at by several of the officers (though themselves orthodox) for quoting the Bible as an unanswerable authority on some point of morality. I suppose it was the novelty of the argument that amused them. But I had gradually come, by this time, to see that the Old Testament from its manifestly false history of the world, with the Tower of Babel, the rainbow as a sign, etc., etc., and from its attributing to God the feelings of a revengeful tyrant, was no more to be trusted than the sacred books of the Hindoos, or the beliefs of any barbarian. The question then continually rose before my mind and would not be banished,-is it credible that if God were now to make a revelation to the Hindoos, would he permit it to be connected with the belief in Vishnu, Siva, &c., as Christianity is connected with the Old Testament. This appeared to me utterly incredible.

By further reflecting that the clearest evidence would be requisite to make any sane man believe in the miracles by which Christianity is supported,-that the more we know of the fixed laws of nature the more incredible do miracles become,-that the men at that time were ignorant and credulous to a degree almost incomprehensible by us,-that the Gospels cannot be proved to have been written simultaneously with the events,-that they differ in many important details, far too important as it seemed to me to be admitted as the usual inaccuracies of eye-witnesses;-by such reflections as these, which I give not as having the least novelty or value, but as they influenced me, I gradually came to disbelieve in Christianity as a divine revelation. The fact that many false religions have spread over large portions of the earth like wild-fire had some weight with me. Beautiful as is the morality of the New Testament, it can hardly be denied that its perfection depends in part on the interpretation which we now put on metaphors and allegories.

But I was very unwilling to give up my belief;-I feel sure of this for I can well remember often and often inventing day-dreams of old letters between distinguished Romans and manuscripts being discovered at Pompeii or elsewhere which confirmed in the most striking manner all that was written in the Gospels. But I found it more and more difficult, with free scope given to my imagination, to invent evidence which would suffice to convince me. Thus disbelief crept over me at a very slow rate, but was at last complete. The rate was so slow that I felt no distress, and have never since doubted even for a single second that my conclusion was correct. I can indeed hardly see how anyone ought to wish Christianity to be true; for if so the plain language of the text seems to show that the men who do not believe, and this would include my Father, Brother and almost all my best friends, will be everlastingly punished.

And this is a damnable doctrine.

Although I did not think much about the existence of a personal God until a considerably later period of my life, I will here give the vague conclusions to which I have been driven. The old argument of design in nature, as given by Paley, which formerly seemed to me so conclusive, fails, now that the law of natural selection has been discovered. We can no longer argue that, for instance, the beautiful hinge of a bivalve shell must have been made by an intelligent being, like the hinge of a door by man. There seems to be no more design in the variability of organic beings and in the action of natural selection, than in the course which the wind blows. Everything in nature is the result of fixed laws." (Autobiography, 85-87).


A few paragraphs later, Darwin wrote;

"Another source of conviction in the existence of God, connected with the reason and not with the feelings, impresses me as having much more weight. This follows from the extreme difficulty or rather impossibility of conceiving this immense and wonderful universe, including man with his capacity of looking far backwards and far into futurity, as the result of blind chance or necessity. When thus reflecting I feel compelled to look to a First Cause having an intelligent mind in some degree analogous to that of man; and I deserve to be called a Theist. And again later, "I cannot pretend to throw the least light on such abstruse problems (regarding the origin of moral thought, gh). The mystery of the beginning of all things is insoluble by us; and I for one must be content to remain an Agnostic."

Six months after her husband's death Mrs. Darwin annotated the passage above in her own handwriting. She writes:-"I should dislike the passage in brackets to be published (from "and have never since doubted" - to "damnable doctrine" GH). It seems to me raw. Nothing can be said too severe upon the doctrine of everlasting punishment for disbelief- but very few now wd. call that 'Christianity, ?"

A few pages later she wrote in another note, " and [it] would give an opening to say, however unjustly, that he [Charles Darwin] considered all spiritual beliefs no higher than hereditary aversions or likings, such as the fear of monkeys towards snakes." She finished, "I should wish if possible to avoid giving pain to your father's religious friends who are deeply attached to him, and I picture to myself the way that sentence would strike them, even those so liberal as Ellen Tollett and Laura, much more Admiral Sullivan, Aunt Caroline, &c., and even the old servants.

Yours, dear Frank,

E. D."

(Notes and text adapted from Darwin, C. R. 1958. The autobiography of Charles Darwin 1809-1882. With the original omissions restored. Edited and with appendix and notes by his grand-daughter Nora Barlow. London: Collins.)

All I can see here is that D'Souza is a very sloppy researcher, or he merely lies for advantage. He concluded his piece,

It's time to set at rest, however, the old myth that evolution is a scientific refutation of theism in general or Christianity in particular. Darwin himself knew it was not so, even if his dimmer acolytes haven't figured that out yet.

There cannot be a scientific refutation of any supernatural system that can call-in convenient miracles like some cosmic air support which conveniently leave no physical evidence. Zeus is as safe from science as Yahweh. So perhaps D'Souza and his dimmer buddies will stop denying science in the attempt to salvage their mythology.

More on crystals and the origin of life

Creationists like to take advantage of the origin of life question for several reasons. The greatest is that few scientists even are familiar with the current research, and so will often fail to be able to discuss it. However, in the movie "Expelled" the question was further obscured by dishonest reporting.

A creationist remarked on a public bulletin board that, "The best part was Dawkins in the end admitting that life could have been started by intelligent design (but couldn't possibly be the God of the Bible), that the intelligent designers had to be started by some kind of natural selection and then intelligently designed us. By their own words Dawkins and his associates looked like they have their own flying spaghetti monster called aliens or crystals, ..."

In the case of Dawkins, he was asked if there were any scenario he could imagine that would allow for an "intelligent designer?" The space alien response was in fact one frequently given by Intelligent Design creationist superstars such as William Dembski, and Mike Behe. Intelligent Design Creationists, in their effort to hide their actual religious origins theology, have often asserted that spacemen or time travelers could be the creators of life on earth. When these ideas have been discussed by actual scientists, they have been discarded as silly, unworkable, or meaningless. But they have been reincarnated by the creationists who then exploited this absurdity in the movie.

The contribution of minerals to the origin of life is laughed at by Stein when mentioned by Michael Ruse. The derision given to the idea that crystals contributed to the origin of life is an excellent example of how scientific ignorance is exploited by the producers of Expelled.

Consider for a moment, your bones are made from calcite- a crystal of calcium carbonate. Those bones and your teeth also need another crystal, apatite, or hydroxylcalcium phosphate. Marine shells are made from calcite and aragonite- both crystals. Plants, particularly grasses need silicon crystals called phytoliths to exist. The bodies of diatoms are mostly crystal silicon. Silicon or calcium crystals are found in nearly all life on earth. Another crystal of iron oxide, magnatite, is found in nearly all life on earth, even bacterial.

Clays are crystals and have been implicated in the origin of earth's life for decades, particularly the crystalline montmorillonite. Recent articles are;

Wang KJ, Ferris JP
2005 "Catalysis and selectivity in prebiotic synthesis: initiation of the formation of oligo(U)s on montmorillonite clay by adenosine-5'-methylphosphate." Orig Life Evol Biosph. Jun; 35(3): 187-212

Saladino R, Crestini C, Ciambecchini U, Ciciriello F, Costanzo G, Di Mauro E.
2004 "Synthesis and degradation of nucleobases and nucleic acids by formamide in the presence of montmorillonites." Chembiochem. Nov 5;5(11):1558-66

Martin M. Hanczyc, Shelly M. Fujikawa, and Jack W. Szostak
2003 "Experimental Models of Primitive Cellular Compartments: Encapsulation, Growth, and Division" Science October 24; 302: 618-622.

Studies of the earliest pre-biotic chemistry in the origin of life shows that interactions between mineral crystals and naturally occurring molecules leads to increased complexity, and more abundant yields. Here again we see an important role for the mineral calcite. Robert Hazen has studied the binding of amino acids to surface of calcite crystals and discovered that they are aligned according to their atomic configuration, or isomer. Another crystal, borate, stabilizes the naturally forming sugar ribose, which is an important molecule needed to form the cellular workhorse RNA. Finally, one of the most common creationist objections to origin of life research is their insistence that the famous Miller-Urey experiment was a failure. This 1953 experiment was the first to demonstrate that a simple energy source, an electrical spark, could induce the spontaneous formation of amino acids from a mixture of gasses. Creationist organization such as the Discovery Institute and the fundamentalist young earth creationists of Answers in Genesis Ministries all claim that the gasses used by Miller could not have been found on the early earth. Disregarding that this is untrue, Stanley Miller’s last paper (published after his death in 2007) demonstrated that the presence of the crystal calcite, and the iron crystal pyrite in the reaction leads to high yields of amino acids even from neutral gas mixtures.

Hazen, R.M., T.R. Filley, and G.A. Goodfriend.
2001 "Selective adsorption of L- and D-amino acids on calcite: Implications for biochemical homochirality." Proceedings of the National Academy of Sciences 98(May 8):5487.

Hazen, RM
2005 "Gen-e-sis" Washington DC: Joceph Henery Press

Ricardo, A., Carrigan, M. A., Olcott, A. N., Benner, S. A.
2004 "Borate Minerals Stabilize Ribose" Science January 9; 303: 196

Cleaves, H. James, John H. Chalmers, Antonio Lazcano, Stanley L. Miller, Jeffrey L. Bada
2008 “A Reassessment of Prebiotic Organic Synthesis in Neutral Planetary Atmospheres” Orig Life Evol Biosph (2008) 38:105–115

There are many more. Is it then silly, or irrational to think that these essential crystals were part of the origin of life? Not at all. Only the ignorant will be fooled by Stein et al and their propaganda movie.

Another book review

I have been writing reviews of books that I have about science v. creationism. They are posted at Amazon.com. Here is one that apparently was blocked by an Amazon.com staff member.

“Old Testament History” was recommended to me last week, and as it was only $6.99 I ordered it and another title by John H. Sailhamer, “Biblical Archaeology.” These are more pamphlets than books, under 100 pages of large print, and lacking indexes or bibliographies. They are part of a series of Bible study aids published by Zondervan.

I can judge my reaction to a book by how many ‘post it’ notes I use, and for books that I find poor, I soon switch from ‘post its’ to folding page corners and writing in the margins. “Old Testament History” lasted until the 9th page of text before I was dogging corners. The section heading on page 18 is “The “Days” of Creation.” The question was obviously regarding the literalist interpretation of Genesis 1 versus the biblical interpretations which view Genesis 1 metaphorically. This is a topic of serious weight, and is the focus of entire books. Sailhamer gives less than a page response, and even after reading it several times you could not guess the range of current opinion.

The very next page begins about 9 pages of contrasts between scientific and fundamentalist positions. This is where I nearly broke the lead in my red pencil. Toward the end of page 19 Sailhamer makes a strange statement that, “ … many scientists assume that the material world is without beginning or end (materialism). The first error is using “scientist” without any qualification. The study of the origin of the universe is known as cosmology, which is a sub-discipline of astrophysics, which is a sub-discipline of physics. Cosmologists are uniformly in agreement that our universe had a definite beginning, and are converging on understanding the timing and mechanism of its end. This is not “materialism” either. Science is materialistic as the topic of science is the material universe. Plumbing is equally materialistic. The scientific notion that the universe had a beginning and will have an end is a scientific result that is seen even by fundamentalists as consistent with Judeo-Christian belief. Sailhamer edged into the bizarre when he then builds on his false assertions to argue that, “A scientist has every right to make such an assumption and thus contradict Scripture, but it should be acknowledged that it is an assumption.” This is wrong in so many ways.

It only gets worse.

On page 23 he falsely claims that Hubble astronomers determined the age of the universe to be “about eight billion years.” He also imagines that this means the universe is expanding at a much faster rate than expected. The age of the universe has been determined, 13.7 billion years, by the Wilkinson Microwave Anisotropy Probe. Let me recommend the NASA website on this; http://map.gsfc.nasa.gov/universe/

These errors of fact, and logic continue for page after page. Sailhamer is grossly ignorant of what science is generally, and it is rare that he makes any true statements about the content of any scientific topic. Worse, he applies his useless presentation of science to issues related to biblical knowledge. Sailhamer and any of his followers should take counsel in the words of Thomas Aquinas (c.a. 1225 – 1274) who in Summa Theological (1273), wrote, "In discussing questions of this kind two rules are to be observed, as Augustine teaches. The first is, to hold to the truth of Scripture without wavering. The second is that since Holy Scripture can be explained in a multiplicity of senses, one should adhere to a particular explanation only in such measure as to be ready to abandon it if it be proved with certainty to be false, lest Holy Scripture be exposed to the ridicule of unbelievers, and obstacles be placed to their believing."

CREATIVE WRITHING

Dear Kyle,

Creationists like to take advantage of the origin of life question for several reasons. The greatest is that few scientists even are familiar with the current research, and so will often fail to be able to discuss it.

However, based on previews of "Expelled" the question was further obscured by dishonest reporting. In the case of Dawkins, as I recall, he was asked if there were any scenario he could imagine that would allow for an "intelligent designer?" The space alien response was in fact one frequently given by Intelligent Design creationist superstars such as William Dembski, and Mike Behe. Intelligent Design creationists in their effort to hide their actual religious origins theology have asserted that spacemen or time travelers could be the creators of life on earth. When these ideas have been discussed by actual scientists, they have been discarded as silly, unworkable, or meaningless. But they have been reincarnated by the creationsits
who then have exploited the absurdity for this movie.



The derision given to the idea that crystals contributed to the origin of life is an excellent example of how scientific ignorance is exploited by the film.

Consider for a moment, your bones are made from calcite- a crystal of calcium carbonate. Those bones and your teeth also need another crystal, apatite, or hydroxylcalcium phosphate. Marine shells are made from calcite and aragonite- both crystals. Plants, particularly grasses need silicon crystals called phytoliths to exist. The bodies
of diatoms are mostly crystal silicon. Silicon or calcium crystals are found in nearly all life on earth. Another crystal of iron oxide, magnatite, is found in nearly all life on earth, even bacterial.

Is it then silly, or irrational to think that these essential crystals were part of the origin of life? Not at all. You will die without them.

You got taken in by Stein.

Dr. Gary Hurd

Expelled Exposed

Justin Chang of Variety wrote,

“There's an intelligent case to be made for intelligent design, …”

http://www.variety.com/index.asp?layout=bio&peopleID=2650

No there isn’t. There are less dishonest efforts, but there are no successful arguments for Intelligent Design Creationism that can pass as science. We tried to find one years ago. I, and a group of twelve other scientists approached the IDC leading authors, Johnson, Behe, and Dembski on their own terms; could IDC be scientific, and as science could it survive on its own without supernatural magic as a prop? The resulting book, “Why Intelligent Design Fails (2004, Rutgers University Press), was also cited as part of the Dover “Pandas Trial” which found that IDC was merely a religious dogma masquerading as science.

Anyone writing about film must know that editing trumps raw footage, or the intent of the people interviewed. So what is one to do? Dawkins is widely know to refuse interviews with creationists because he knows from long experience that there is no possible protection from the editing bias. In ideologically driven documentaries such as “Expelled” you might find that your “answer” was to a question the interviewer never even asked. The “Expelled” producers avoided Dawkins’s (and other’s) resistance by lying about the nature of the film they were making.

The NCSE webpages dedicated to Exposing Expelled detail this and other lies and misrepresentations made by Stein and his cohorts.

http://www.expelledexposed.com/

This caught my eye a while ago:



It is a scan from a 1950s "men's magazine." I had been searching for items related to the American eugenics movement, and this beauty popped up. I found a 1933 copy on Amazon that was actually offered at the same $2.99 as the 1953 advertised price. I’ll be using the advertisement and the book by Herman H. Rubin, M.D., as a case study in popular eugenics thinking in the USA prior to the Second World War, and just after it.

The language used in the advertisement is interesting all by itself. The banner has “tortured” “fear” and “sex” all linked to each other. Notice that the sadomasochistic imagery continues; “Shackled by tortures of improper Sex Knowledge,” “DON’T be the SLAVE - BE THE MASTER of LOVE.”

These men’s magazines were also rife with other sadomasochistic images involving Nazis, as in the cover art from a 1966 magazine seen below;



Creationists habitually employ the same themes as in the advertisement, and the cover art in regard to the theory of evolution. They claim that teaching evolutionary biology turns children in to depraved sex maniacs, and that evolutionary theory lead directly to the Holocaust.

Is it their sexual repression and fear, or merely a convenient and cynical ploy?

"Darwin's Demise" A partial review.

White, Joe, Nicholas Comninellis
2001 "Darwin's Demise: Why Evolution Can't Take the Heat" Green Forest AR: Master Books

From the rear cover, "Authors Joe White and Nicholas Comninellis have a passion for truth? " Sadly this passion is nowhere evident in their book. The falsehoods misrepresentations and plain old fashion lies start from the first page and continue on and on. I could not find a single page in the first two chapters without at least one significant error of fact, or reasoning. Most pages have many errors (I counted at least eight on several separate pages).

One thing the authors truly excel at is the use of "quote mines." The false, or out-of-context quote is a favorite tactic of professional young Earth creationists' efforts to undermine science and reason. This is so widely recognized among those who follow these efforts that it has come to be called "quote mining" and a compilation of many examples and their corrections has been published at "The Quote Mine Project." The Answers in Genesis Ministries, formerly the Creation Science Foundation of Brisbane, Australia, even produced a book of quotes called "The Revised Quote Book (copyright 1990)" that has been debunked at "Cretinism or Evilution? No. 3".

At the moment, I want to detail just one quote mining example from Darwin's Demise that stands as a classic of the practice, and characterizes the sort of "truth" the authors so passionately employ.

White and Comninellis wrote, "In stark contrast to his theological training, Darwin later demonstrated his enormous contempt for anything Christian. He wrote: "The Old Testament, from its manifestly false history of the earth, was no more to be trusted than the sacred books of the Hindus, or the beliefs of any barbarian. The New Testament is a damnable doctrine. [I can] hardly see how anyone ought to wish Christianity to be true" (The Origin of Species, 1859). (From Darwin's Demise pg 8-9).

This a breathtaking misrepresentation. No, it is a lie because Darwin never showed contempt for "anything Christian." White and Comninellis with their "passion for truth" have torn apart sentences separated by pages, inverted their orders, added words and concepts, deleted clarifying material and all and all have lied to their readers. (James 3:1. Let not many of you become teachers, my brethren, knowing that as such we will incur a stricter judgment).

What Charles Darwin actually wrote in his Autobiography (published 1904) (Not in the Origin of Species published 1859) was a description of how over years his faith changed from a devout orthodox young theology student, to theist and eventually agnostic. His first realization was that the geological features of the earth did not correspond to those described in the Old Testament. There were no geological evidences for a global flood, no anthropological evidences for a Tower of Babel, and he came to reject the Old Testament theology of a violent "jealous God." Much later in his life (particularly following the early death of his daughter Anna at age 10), Darwin came to reject the doctrine of damnation and eternal torture for all unbelievers- a doctrine he called itself "damnable." At no time in his life did he express contempt for Christianity. Indeed, you will see below that he generally admired the New Testament moral code, inspite of his growing doubts about religion.

In the following quote from Darwin Online, I have bolded the sections that White and Comninellis have corrupted, and placed the words they used in italics. Readers will easily see they have also added words without indicating their alteration of the text.

"DURING THESE two years (October 1836 to January 1839 GH) I was led to think much about religion. Whilst on board the Beagle I was quite orthodox, and I remember being heartily laughed at by several of the officers (though themselves orthodox) for quoting the Bible as an unanswerable authority on some point of morality. I suppose it was the novelty of the argument that amused them. But I had gradually come, by this time, to see that the Old Testament from its manifestly false history of the world, with the Tower of Babel, the rainbow as a sign, etc., etc., and from its attributing to God the feelings of a revengeful tyrant, was no more to be trusted than the sacred books of the Hindoos, or the beliefs of any barbarian. The question then continually rose before my mind and would not be banished,?is it credible that if God were now to make a revelation to the Hindoos, would he permit it to be connected with the belief in Vishnu, Siva, &c., as Christianity is connected with the Old Testament. This appeared to me utterly incredible.

By further reflecting that the clearest evidence would be requisite to make any sane man believe in the miracles by which Christianity is supported,?that the more we know of the fixed laws of nature the more incredible do miracles become,?that the men at that time were ignorant and credulous to a degree almost incomprehensible by us,?that the Gospels cannot be proved to have been written simultaneously with the events,?that they differ in many important details, far too important as it seemed to me to be admitted as the usual inaccuracies of eye-witnesses;?by such reflections as these, which I give not as having the least novelty or value, but as they influenced me, I gradually came to disbelieve in Christianity as a divine revelation. The fact that many false religions have spread over large portions of the earth like wild-fire had some weight with me. Beautiful as is the morality of the New Testament, it can hardly be denied that its perfection depends in part on the interpretation which we now put on metaphors and allegories.

But I was very unwilling to give up my belief;?I feel sure of this for I can well remember often and often inventing day-dreams of old letters between distinguished Romans and manuscripts being discovered at Pompeii or elsewhere which confirmed in the most striking manner all that was written in the Gospels. But I found it more and more difficult, with free scope given to my imagination, to invent evidence which would suffice to convince me. Thus disbelief crept over me at a very slow rate, but was at last complete. The rate was so slow that I felt no distress, and have never since doubted even for a single second that my conclusion was correct. I can indeed hardly see how anyone ought to wish Christianity to be true; for if so the plain language of the text seems to show that the men who do not believe, and this would include my Father, Brother and almost all my best friends, will be everlastingly punished.

And this is a damnable doctrine.

Although I did not think much about the existence of a personal God until a considerably later period of my life, I will here give the vague conclusions to which I have been driven. The old argument of design in nature, as given by Paley, which formerly seemed to me so conclusive, fails, now that the law of natural selection has been discovered. We can no longer argue that, for instance, the beautiful hinge of a bivalve shell must have been made by an intelligent being, like the hinge of a door by man. There seems to be no more design in the variability of organic beings and in the action of natural selection, than in the course which the wind blows. Everything in nature is the result of fixed laws." (Autobiography, 85-87)

A few paragraphs later, Darwin wrote;

"Another source of conviction in the existence of God, connected with the reason and not with the feelings, impresses me as having much more weight. This follows from the extreme difficulty or rather impossibility of conceiving this immense and wonderful universe, including man with his capacity of looking far backwards and far into futurity, as the result of blind chance or necessity. When thus reflecting I feel compelled to look to a First Cause having an intelligent mind in some degree analogous to that of man; and I deserve to be called a Theist. And again later, "I cannot pretend to throw the least light on such abstruse problems (regarding the origin of moral thought, gh). The mystery of the beginning of all things is insoluble by us; and I for one must be content to remain an Agnostic."

Six months after her husband's death Mrs. Darwin annotated the passage above in her own handwriting. She writes:?"I should dislike the passage in brackets to be published (from "and have never since doubted"?. to "damnable doctrine" GH). It seems to me raw. Nothing can be said too severe upon the doctrine of everlasting punishment for disbelief?but very few now wd. call that 'Christianity, ?"

A few pages later she wrote in another note, "... and [it] would give an opening to say, however unjustly, that he [Charles Darwin] considered all spiritual beliefs no higher than hereditary aversions or likings, such as the fear of monkeys towards snakes." She finished, "I should wish if possible to avoid giving pain to your father's religious friends who are deeply attached to him, and I picture to myself the way that sentence would strike them, even those so liberal as Ellen Tollett and Laura, much more Admiral Sullivan, Aunt Caroline, &c., and even the old servants.

Yours, dear Frank,

E. D."

(Notes and text adapted from Darwin, C. R. 1958. The autobiography of Charles Darwin 1809-1882. With the original omissions restored. Edited and with appendix and notes by his grand-daughter Nora Barlow. London: Collins.)